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  • Pyramiding of Mutated Genes Contributing to Crop Quality and Resistance to Stress Affecting Quality

    Closed for proposals

    Project Type

    Coordinated Research Project

    Project Code

    D23025

    CRP

    227

    Approved Date

    1 March 2004

    Status

    Closed

    Start Date

    1 July 2004

    Expected End Date

    3 June 2010

    Completed Date

    3 June 2010

    Description

    The improvement, and the preservation against stress, of quality traits in food and industrial crops are among the most important goals in plant breeding, and are gaining more and more attention. Improved crop quality is of great economical and social value for both developed and developing countries, and has the capacity to bring about greatly enhanced quality of life. Major constraints to improving quality in agricultural crops include a lack of understanding of the genetic basis of quality traits and limited diverse and desirable germplasm, and the difficulty in efficiently combining favourable alleles into an optimal genotype. This CRP will address the technological and methodological issues associated with "quality gene pyramiding" - using molecular markers to identify and breed multiple desired quality genes into one variety of seed crops.

    Objectives

    The overall objectives of this CRP will focus on the development and transfer between participants of methodologies and technologies for the identification and tagging of mutated genes contributing to important crop quality characters, and their pyramiding to develop improved breeding material using molecular marker assisted selection.

    Specific objectives

    1. Development and establishment of efficient methodologies for the induction of mutants and screening of crop germplasm with diverse and desirable quality characters including nutritional characters and tolerance to stresses affecting quality in crop plants.

    2. Development of molecular markers for tagging genes for quality characters and enhanced tolerance to stresses in induced mutants or other germplasm.

    3. Use of molecular markers to pyramid loci determining desired quality characters and enhanced tolerance to stresses with the aim of developing improved crop varieties.

    4. Genetic dissection of quality and stress resistance characters using molecular markers to establish the number and the linkage relationships of genes responsible for such traits.

    5. Transfer of knowledge and technologies between participants to accelerate breeding programs for the improvement of quality, nutritional, and stress tolerance traits in crops.

    6. Develop improved germplasm with enhanced quality traits.

    Impact

    1. Crop germplasm enriched by the generation of more than 20 novel mutant lines and 100 advanced breeding lines.
    2. Nine new varieties including rice (4), groundnut (3) and cotton (2) have been released for large-scale production.
    3. Thousands of molecular markers have been developed for basic and applied research.
    4. Important quality and stress tolerance traits have been tagged by molecular markers in rice, barley, okra, groundnut, wheat, cotton
    and potato.
    5. New methods and techniques developed for screening of crop quality and stress tolerance mutants.
    6. Increase in the production of quality foods and farmers’ food supply and income (e.g. Vietnam)
    7. Enhanced bilateral and multi-lateral collaboration among the participating institutes ( China –Japan; China-Australia) and
    access to international expertise and facilities;
    8. Enhanced research and educational capacity on molecular marker technologies in the participating institutes (Thailand, India, )
    9. Enhanced public awareness about the importance and potential of plant mutagenesis for meeting challenge of climate change and
    global warming (TV programme in Australia)

    Relevance

    1) To generate genetic variability for quality traits and resistance to quality-affecting stresses through use of induced mutations for germplasm enhancement in crop plants;
    2) To characterize loci at the genetic and molecular level and utilize the information for more efficient crop improvement through the combined use of quality trait mutants and existing germplasm collections with application of molecular resources (markers, linkage maps, etc) through marker assisted selection;
    3) To foster implementation of marker assisted selection for gene pyramiding in plant breeding programmes;
    4) To deliver germplasm with enhanced quality and stress resistance attributes for the benefit of crop breeding programmes in developing countries;
    5) To foster relationships, transfer knowledge, technology, and genetic and molecular resources between all participating research groups for their mutual benefit;
    6) To produce guidelines and publish methods on the application of marker assisted selection for gene pyramiding in plant breeding.
    7) Produce and communicate research results that enhance the quality and relevance of mutation breeding.

    CRP Publications

    Type

    China

    Year

    2008

    Description

    Hu WJ, XY Zhang, TZ Zhang, Wangzhen Guo. Molecular tagging and allelic analysis for QTLs from elite fiber quality in upland cotton. Acta Agronomica Sinica,34:578-586.

    Country/Organization

    China

    Type

    Peer reviewed national

    Year

    2005

    Description

    Guo WZ, TZ Zhang, XF Zhu, JJ Pan, J Yu. Modified backcross pyramiding breeding with molecular marker-assisted selection and its applications in cotton. Acta Agronomica Sinica, 31:963-970.

    Country/Organization

    China

    Type

    Peer reviewed national journal

    Year

    2007

    Description

    Khan, A.J., A. Ali, F. Azam, M. Tariq and A. Zeb. Identification and isolation of low phytic acid wheat (Triticum aestivum L.) inbred lines / mutants. Pak. J. Bot., 39(6): 2051-2058.

    Country/Organization

    Pakistan

    Type

    Scientific paper at international conferences and symposia

    Year

    2006

    Description

    Manasievska Simic S, Angelov I., Ivanovska S., Simeonovska E., Ivanovski M., Jankulovska M. Quality of Macedonian soft wheat cultivars I. HMW Composition. Proceedings of Biotechnology Conference, University of Kraguevac, 285-291.

    Country/Organization

    FYR Macedonia

    Type

    Scientific paper at international conferences and symposia

    Year

    2009

    Description

    Jankuloski Lj., Jankulosvska M., Simeonovska E. Induction of doubled haploids in Macedonian wheat genotypes (Triticum aestivum L.). Book of Abstracts, IV Congress of the Serbian Genetic Society, 1st – 5th June, 2009, Tara, Serbia.

    Country/Organization

    FYR Macedonia

    Type

    Peer reviewed international

    Year

    2005

    Description

    Shen XL,WZ Guo, J Yu,RJ Kohel,TZ Zhang. Molecular tagging of qtls for fiber qualities in three diverse lines in upland cotton using SSR marker. Mol Breed,15:169-181.

    Country/Organization

    China

    Type

    Scientific paper at international conferences and symposia

    Year

    2007

    Description

    Kim, H.S., et al. Genetic characterization of high-lysine barley germplasm. Spring Annual Meeting of The Korea Society of Crop Science, p.166.

    Country/Organization

    Republic of Korea

    Type

    Doctoral thesis

    Year

    2007

    Description

    Ljupco Jankuloski. Induction of doubled haploids in varieties of wheat (Triticum aestivum) and their mutant progenies. PhD thesis. Faculty of Agricultural Sciences and Food.

    Country/Organization

    FYR Macedonia

    Type

    Peer reviewed international

    Year

    2009

    Description

    Song Xianliang, Tianzhen Zhang. Identification of Quantitative Trait Loci Controlling Plant Architectural Traits in Cotton. Plant Sci, 177:317-323.

    Country/Organization

    China

    Type

    Peer reviewed international journal

    Year

    2010

    Description

    Kim, H.S., et al. Selection of resistance genes to local strains of barley yellow mosaic virus (BaYMV) and barley mild mosaic virus (BaMMV) in Korea. International Journal of Life Sciences (in press).

    Country/Organization

    Republic of Korea

    Type

    Scientific paper at international conferences and symposia

    Year

    2008

    Description

    39. Do Khac Thinh et al. 2008, Socio-economic Impacts of Mutant Rice Varieties in Southern Vietnam, 2008, International Symposium on Induced Mutations in Plants organized by FAO/IAEA, 12-15 August, 2008 Vienna, Austria

    Country/Organization

    Vietnam

    Type

    Peer reviewed national

    Description

    ,2005

    Country/Organization

    China

    Type

    Peer reviewed national journal

    Year

    2007

    Description

    Mondal, S., Badigannavar, A.M., Kale, D.M. and Murty, G.S.S. 2007 Induction of genetic variability in a disease resistant groundnut breeding line. BARC Newsletter 285: 237-247.

    Country/Organization

    India

    Type

    Scientific paper at international conferences and symposia

    Year

    2008

    Description

    Mondal S., Badigannavar A.M. and D’Souza S.F. 2008 Mutational origin of genetic diversity in cultivated groundnut (Arachis hypogaea L.). Abstract. International Symposium on Induced Mutations in Plants. 12-15 August 2008 IAEA, Vienna, Austria. Pp: 22.

    Country/Organization

    India

    Type

    Scientific paper at international conferences and symposia

    Year

    2008

    Description

    Kim, H.S., et al.. Genetic analysis of BaYMV/ BaMMV resistance rym1 and rym5 to local stains. 10th International Barley Genetics Symp., Alexandria, Egypt .

    Country/Organization

    Republic of Korea

    Type

    Scientific paper at international conferences and symposia

    Year

    2006

    Description

    Zhou BL, TZ Zhang. Toward to the construction of mutant library induced by T-DNA insertion and EMS in diploid cotton. Abstract Proc. ICGI Research Conference, Brasilia-DF, Brazil, Sept 18-20,2006, p20.

    Country/Organization

    China

    Type

    Peer reviewed international

    Year

    2007

    Country/Organization

    China

    Type

    Scientific paper at international conferences and symposia

    Year

    2008

    Description

    Badigannavar A.M. and Mondal S. Integration of mutation with recombination breeding for genetic improvement of cultivated groundnut (Arachis hypogaea L.). Abstract. Third International Conference of the Peanut Research Community on Advances in Arachis through Genomics and Biotechnology (AAGB-2008). 4-8 November 2008 ICRISAT, Hyderabad, India. Pp: 5

    Country/Organization

    India

    Type

    Peer reviewed international

    Year

    2006

    Description

    Shen XL, TZ Zhang,WZ Guo, XFi Zhu, XY Zhang. Mapping QTLs with main effects, epistatic effects and QTL × environment interaction for fiber and yield traits in RILs of upland cotton. Crop Sci, 46:61-66

    Country/Organization

    China

    Type

    Peer reviewed international journal

    Year

    2008

    Description

    Mondal S., Sutar S.R. and Badigannavar A.M. Comparison of RAPD and ISSR marker profiles of cultivated peanut genotypes susceptible or resistant to foliar diseases. Journal of Food Agriculture & Environment. 6(2): 181-187.

    Country/Organization

    India

    Type

    Scientific paper at international conferences and symposia

    Year

    2008

    Description

    Guzy-Wróbelska J., M. Nawrot, A. Dobrowolska, A. Braszewska-Zalewska, I. Szarejko, Molecular Mapping of the Gene Responsible for Root Shortening in Barley. Molecular Mapping and Marker Assisted Selection in Plants. 3-6 February 2008, Vienna, Austria, Abstracts, p.4.

    Country/Organization

    Poland

    Type

    Peer reviewed national journal

    Year

    2007

    Description

    Badigannavar A.M. and Mondal S. Mutation experiments and recent accomplishments in Trombay groundnuts. IANCAS Bulletin Vol. VI (4): 308-318.

    Country/Organization

    India

    Type

    Peer reviewed international

    Year

    2006

    Description

    Bao J.S., Shen, S. Q., Sun, M., and Corke, H. Analysis of genotypic diversity in the starch physicochemical properties of nonwaxy rice: apparent amylose content, pasting viscosity and gel texture. Starch/Starke 58:259-267

    Country/Organization

    China

    Type

    Peer reviewed international

    Year

    2007

    Description

    Bao JS, Sun M. and Corke H. Analysis of genotypic diversity in starch thermal and retrogradation properties in nonwaxy rice. Carbohydrate Polymers, 67: 174-181.

    Country/Organization

    China

    Type

    Peer reviewed international journal

    Year

    2009

    Description

    Moloney C, Griffin D, Jones PW, Bryan GJ, McLean K, Bradshaw JE, Milbourne D. Development of diagnostic markers for use in breeding potatoes resistant to Globodera pallida pathotype Pa2/3 using germplasm derived from Solanum tuberosum Gp Andigena CPC 2802. Theor Appl Genet (in press).

    Country/Organization

    United Kingdom

    Type

    Peer reviewed international journal

    Year

    2005

    Description

    Nawrot, M., I. Szarejko and M. Maluszynski. Barley mutants with short roots. BGN 35: 3-8.

    Country/Organization

    Poland

    Type

    Scientific paper at international conferences and symposia

    Year

    2009

    Description

    Do Khac Thinh, Nguyen Thi Cuc, Hung Phi Oanh & Dao Minh So et al, 2009. Application of Radiation Mutation Combined with Hybridization to Breed Rice Varieties having Short Duration, Resistance to Insects, Diseases & High Quality for Export; Proceedings of Rice Conference of CDRI & IRRI organized 10-September-2007, Can Tho, Vietnam.

    Country/Organization

    Vietnam

    Type

    Scientific paper at international conferences and symposia

    Year

    2009

    Description

    Badigannavar A.M. and Mondal S. and D’Souza S.F. Success story of radiation based induced mutagenesis in groundnut (Arachis hypogaea L.). International Conference on Peaceful Uses of Atomic Energy, Sept 29 – Oct 1, 2009, New Delhi. Vol .II Pp: 544-545.

    Country/Organization

    India

    Type

    Peer reviewed national journal

    Year

    2007

    Description

    Mondal S., Badigannavar A.M., Kale D. M. and Murty G.S.S. An induced dominant seed coat colour mutation in groundnut. Indian Journal of Genetics and Plant Breeding, 67 (2): 177-179.

    Country/Organization

    India

    Type

    Scientific paper at international conferences and symposia

    Year

    2008

    Description

    Mondal S. and Badigannavar A.M. Identification of SSR marker for resistance to late leaf spot in cultivated groundnut (Arachis hypogaea L.). Abstract. 5th International Crop Science Congress (ICSC), April 13-18, 2008, Jeju, Republic of Korea. Pp: 266.

    Country/Organization

    India

    Type

    Peer reviewed national journal

    Year

    2009

    Description

    Ivanova, B., Bojinov, B. 2009. Identification of QTLs for fiber quality in a Bulgarian cotton breeding collection. Genetics and Breeding (Blg.), in press.

    Country/Organization

    Bulgaria

    Type

    Scientific paper at international conferences and symposia

    Year

    2008

    Description

    Bao JS., Xie JK., Hu BL. Isolation and characterization of mutants from indica rice 93-11 and Guanluai (Oryza sativa L.) induced by gamma irradiation. In: Abstracts of FAO/IAEA International Symposium on Induced Mutations in Plants, 12-15 August 2008, Vienna, Austria, P19.

    Country/Organization

    China

    Type

    Scientific paper at international conferences and symposia

    Year

    2005

    Description

    Kim, H.S., et al. Molecular mapping of barley yellow mosaic virus disease resistance. Spring Annual Meeting of The Korea Society of Crop Science, pp. 198-199.

    Country/Organization

    Republic of Korea

    Type

    Scientific paper at international conferences and symposia

    Year

    2009

    Description

    Badigannavar A.M. and Mondal S. Incorporation of disease resistance in groundnut (Arachis hypogaea L.) through mutation and recombination breeding. IAEA-RCA Training Course on Mutation Breeding Approaches to Improving Disease Resistance, 5-9 Oct., 2009 BARC Mumbai, pp: 34-39.

    Country/Organization

    India

    Type

    Peer reviewed international

    Year

    2009

    Description

    Chen H, N Qian, WZ Guo, QP Song, BC Li, FJ Deng, CG Dong, TZ Zhang. Using three overlapped RILs to dissect genetically clustered QTL for fiber strength on chro.24 in upland cotton. Theor Appl Genet,119: 605-612.

    Country/Organization

    China

    Type

    Peer reviewed international journal

    Year

    2009

    Description

    Hein I, Birch PRJ, Danan S, Lefebvre V, Odeny DA, Gebhardt C, Trognitz F, Bryan GJ. Progress in mapping and cloning qualitative and quantitative resistance against P. infestans in potato and its wild relatives. Potato Research (in press).

    Country/Organization

    United Kingdom

    Type

    Peer reviewed national journal

    Year

    2007

    Description

    Badigannavar, A.M., Mondal, S. and Murty, G.S.S. Induction of salt tolerance for radicle growth in groundnut through gamma ray mutagenesis. BARC Newsletter 285: 226-236.

    Country/Organization

    India

    Type

    Peer reviewed national

    Year

    2007

    Description

    7. Wang J, WZ Guo, TZ Zhang. QTL mapping for fiber quality properties in cotton cultivar Yumian1. Acta Agronomica Sinica, 33:1915-1921.

    Country/Organization

    China

    Type

    Peer reviewed international journal

    Year

    2007

    Description

    Mondal S., Badigannavar A.M. and Murty G.S.S. RAPD markers linked to rust resistance gene in cultivated groundnut (Arachis hypogaea L.). Euphytica 159: 233-239.

    Country/Organization

    India

    Type

    Scientific paper at international conferences and symposia

    Year

    2008

    Description

    Bao JS. Unlocking naturally occurring variation fro starch quality by gene-tagged markers in rice. In: Abstracts of FAO/IAEA International Symposium on Induced Mutations in Plants, 12-15 August 2008, Vienna, Austria, P196.

    Country/Organization

    China

    Type

    Peer reviewed international journal

    Year

    2009

    Description

    Mondal S. and Badigannavar A. M. Molecular diversity and association of SSR markers to rust and late leaf spot resistance in cultivated groundnut (Arachis hypogaea L.). Plant Breeding. DOI:10.1111/j.1439-0523.2009.01635.x

    Country/Organization

    India

    Type

    Peer reviewed international

    Year

    2008

    Description

    Bao JS., Jin L., Xiao P., Sun M., Corke H.Starch physicochemical properties and their associations with microsatellite alleles of starch-synthesizing genes in a rice RIL population. Journal of Agricultural and Food Chemistry, 56 (5): 1589-1594

    Country/Organization

    China

    Type

    Peer reviewed international

    Year

    2006

    Description

    Bao JS, Corke H and Sun M. Microsatellites, single nucleotide polymorphisms and a sequence tagged site in starch-synthesizing genes in relation to starch physicochemical properties in nonwaxy rice (Oryza sativa L.). Theor Appl Genet 113: 1185-1196

    Country/Organization

    China

    Type

    Peer reviewed international journal

    Year

    2006

    Description

    Zeb, A., S. Tariq, A.J. Khan, A.Badshah and T.Muhammad. Phytic acid content and grain yield as influenced by sowing time in wheat genotypes. Advances in Food Science, 28 (4): 228-232.

    Country/Organization

    Pakistan

    Type

    Scientific paper at international conferences and symposia

    Year

    2008

    Description

    Janiak A., J. Guzy-Wróbelska, A. Polak, M. Guty, A. Rusek, I. Szarejko. Fine mapping of genes responsible for root hair development in barley. Molecular Mapping and Marker Assisted Selection in Plants. 3-6 February 2008, Vienna, Austria, Abstracts, p.42.

    Country/Organization

    Poland

    Type

    Scientific paper at international conferences and symposia

    Year

    2009

    Description

    Park, H.H., et al.. Analyzing seed protein in a high lysine barley mutant using proteomics approach. Spring Annual Meeting of The Korea Society of Crop Science, pp. 133.

    Country/Organization

    Republic of Korea

    Type

    Peer reviewed international

    Year

    2009

    Description

    3. Wu CT, BL Zhou, TZ Zhang. Isolation and characterization of a sterile dwarf mutant in Asian cotton (Gossypium arboretum L.). J Genetics & Genomics, 36:343-353.

    Country/Organization

    China

    Type

    Doctoral thesis

    Year

    2008

    Description

    Emilija Simeonovska. Effects of gamma rays irradiation of some Macedonian cultivars and lines of soft wheat (Triticum aestivum). PhD thesis. Faculty of Agricultural Sciences and Food.

    Country/Organization

    FYR Macedonia

    Type

    Peer reviewed international

    Year

    2006

    Description

    Bao, J.S., H. Corke and M. Sun. Nucleotide diversity in starch synthase IIa and validation of single nucleotide polymorphisms in relation to starch gelatinization temperature and other physicochemical properties in rice (Oryza sativa L.). Theor Appl Genet 113: 1171-1183

    Country/Organization

    China

    Type

    Scientific paper at international conferences and symposia

    Year

    2009

    Description

    Guzy-Wrobelska J., M. Nawrot, A. Janiak, Adamska K., K., I. Matyszczak., I. Szarejko. Molecular mapping of genes responsible for root architecture in barley. The 4th Conference of Polish Society of Experimental Plant Biology. Experimental Plant Biology. 21-25 September, 2009 Kraków.

    Country/Organization

    Poland

    Type

    Peer reviewed international journal

    Year

    2007

    Description

    Hein I, McLean K, Chalhoub B, Bryan GJ .Generation and Screening of a BAC library from a diploid potato clone to unravel durable late blight resistance on linkage group IV. International Journal of Plant Genomics, vol. 2007, Article ID 51421, 5 pages, 2007. doi:10.1155/2007/51421.

    Country/Organization

    United Kingdom

    Type

    Scientific paper at international conferences and symposia

    Year

    2007

    Description

    Kim, H.S., et al. Genetic allelism of shrunken endosperm in high lysine barley : Is it possible to develop high lysine barley cultivars? Spring Annual Meeting of The Korea Society of Crop Science, p.76.

    Country/Organization

    Republic of Korea

    Type

    Peer reviewed international

    Year

    2009

    Description

    Jin L, Lu Y, Shao YF, Zhang G, Xiao P, Shen SQ, Corke H, Bao JS. Molecular marker assisted selection for improvement of the eating, cooking and sensory quality of rice (Oryza sativa L.). Journal of Cereal Science, (in press).

    Country/Organization

    China

    Type

    Scientific paper at international conferences and symposia

    Year

    2009

    Description

    Do Khac Thinh, Nguyen Thi Cuc, Hung Phi Oanh & Dao Minh So et al. Mutation Breeding and Socio-economic Effectiveness in Southeastern & Highlands 2009, Proceedings of National Conference of Vietnam on Application of Nuclear Techniques, organized, 20-22th August, 2009, Nha Trang , Vietnam.

    Country/Organization

    Vietnam

    Type

    Scientific paper at international conferences and symposia

    Year

    2006

    Description

    Mondal, S., Sutar, S.R., Badigannavar, A.M. and Murty, G.S.S. Genetic diversity in cultivated groundnut revealed by Inter Simple Sequence Repeat markers. Abstract. BARC Golden Jubilee and DAE-BRNS Life Sciences Symposium 2006 (LSS - 2006) on Trends in Research and Technologies in Agriculture and Food Sciences, December 18-20, 2006, BARC, Mumbai. pp: 93.

    Country/Organization

    India

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