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  • Climate Proofing of Food Crops: Genetic Improvement for Adaptation to High Temperatures in Drought Prone Areas and Beyond

    Closed for Proposals

    Project Type

    Coordinated Research Project

    Project Code

    D23029

    CRP

    1756

    Approved Date

    2 September 2010

    Project Status

    Closed

    Start Date

    15 February 2011

    Expected End Date

    15 February 2016

    Completed Date

    12 October 2016

    Description

    Climate change is now largely accepted as a real and pressing global problem. The Intergovernmental panel on Climate Change (IPCC) considers four families of socio-economic development and associated emission scenarios known as Special Report on Emissions Scenarios: A2, B2, A1, and B1. Out of these; A1, the ‘‘business-as-usual scenario,’’ corresponds to the highest emissions of greenhouse gases and aerosol precursors, and B1 corresponds to the lowest, the other scenarios being intermediate between these two. It has recently been estimated that developing countries will bear 70-80% of the costs of climate change damage with agriculture being the most impacted sector. The main impacts of climate change on agriculture will most probably be experienced through higher temperatures (increase in minima and maxima), altered changes in rainfall patterns (in amount, spatial and temporal distributions), increased rates of evaporation, increased intensity and frequency of extreme events (floods and droughts), and raise of sea level affecting coastal areas where large quota of cultivated land are located (intrusion of salty water).

    The responses that agriculture systems world wide can put in place to cope with the expected impact of climate change and to reduce the food insecurity range from institutional and policy levels to the best management practices and technology advancement. An important opportunity in terms of technology advancement is offered by the genetic improvement of crops that can adapt to the future climate conditions; i.e., “climate proofing” crops. Additionally, data collected from the selected crops: rice and common bean during the course of the CRP may be useful for a study of mathematical models for responses to high temperature in association with AquaCrop - FAO.

    This CRP will focus on improving the grain yields of a major cereal (rice) and a grain legume (common bean) to high temperature stress in the face of climate change. These two crops are essential staples in the diets of millions of impoverish and vulnerable populations, and therefore any attempt in increasing their yields under high temperature stress could have a major and positive impact in terms of food security, improved health and income generation. The intent is to develop tools that allow plant breeders using mutation programs together with enhancing plant biotechnologies to develop improved crop varieties with higher and wider adaptability to temperatures variations as according to SRES predictions. Up to 10 research contracts are expected to be awarded and four no cost agreement holders from advanced laboratories with solid knowledge in the selected technologies and fields of expertise invited to share their experience with the contract holders. In addition, it is foreseen that 2 technical contracts will be awarded for services in identification and isolation of mutant genes in model crops using high throughput DNA technologies. Coordination and technical management will be handled by the scientific secretary in the Plant Breeding and Genetics Section.

    Specific Objectives

    To explore whole plant genetic variability and identify high yielding genotypes from existing natural and mutated germplasm of cereals (preferably rice) and nitrogen fixing grain legumes (preferably common bean) for adaptation to high temperature; establishing robust experimental protocols for physiological, genetic and molecular studies; use advanced biotechnology, bioinformatics and genomics tools for whole plant analysis and data visualization.

    To facilitate technology transfer, sharing of genetic and knowledge resources (through electronic means, peer reviewed publications, workshops, training courses, field days) and foster networks between participating research groups and potential end users for their mutual benefit

    Impact

    (i) Development of hands on protocols and robust efficient screening techniques in rice that will help other scientist in MSs to fast screen mutant population/genotypes for heat stress temperature
    (ii) Development of new germplasm through mutation breeding and assisted biotechnologies in rice and common bean
    (iii) Release of new rice mutant variety with has better heat tolerance than local varieties
    (iv) Development of new mutant lines which are pipeline to release and contribute food security in MSs with better adaptation to climate change
    (v) Increased knowledge and experience to resilience for heat stress tolerance for current and future climate change
    (vi) Dissemination of research results through lectures to the students, proceeding/presentations in conferences/workshops and about 40 scientific publications (papers, book and book chapters)
    (vii) Dissemination of produced information under the CRP through outreach activities including trainings, farmers day, workshops, public exhibitions
    (viii) Integration between mutation breeding and molecular genetics scientists in this CRP developed bi- and multi-lateral collaborations and facilitated sharing genetic and knowledge resources in different platforms
    (ix) Productions pf PhD, MSc and BS thesis on research directly contributing to this CRP
    (x) Contribute food security through better adapted climate change varieties
    (xi) Enhanced R&D capacity on phenotypical, physiological and genotypical screening of mutant rice and bean for heat stress tolerance to better adapt on-going and future climate change scenarios
    (xii) Enhanced public awareness about the importance of potential of plant mutation breeding for meeting resilience of climate change and global warming

    Relevance

    Improving the delivery of knowledge /experience for meeting resilience of climate change and global warming.

    CRP Publications

    Jawaharlal Nehru University (JNU)-INDIA
    Oral Presentation International symposium on rice functional genomics -INDIA
    2013
    Das P, Singla---Pareek SL and Pareek A. (2013) Characterization of gamma-ray induced rice mutant reveals the alteration in plant morphology, chloroplast structure, thylakoid organization and expression of transcripts involved
    Universidad Nacional Autónoma de México
    Journal- BMC Genomics
    2012
    Pablo Peláez, Minerva S Trejo, Luis P I?iguez, Georgina Estrada-Navarrete, Alejandra A Covarrubias, José L Reyes and Federico Sanchez; Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing
    India
    Poster presentation /Inter Drought V,21-25 February 2017, Book of Abstracts, p156, abstract number 444.
    2017
    Pre-Field Screening for Heat Tolerant Mutants in Rice, Fatma Sarsu, Abdelbagi M.A. Ghanim, Priyanka Das, Rajeev Bahuguna, Kusolwa Paul Mbogo, Muhammad Ashraf, Sneh Lata Singla Pareek, Ashwani Pareek, Brian P. Forster, Ivan Ingelbrecht
    Centro Internacional de Agricultura Tropical (CIAT)- COLOMBIA
    Turkish Journal of Field Crops 18: 73-77.
    2013
    Ghanbari, A. A., S. H. Mousavi, A. M. Gorji and I. Rao. 2013. Effects of water stress on leaves and seeds of bean (Phaseolus vulgaris L.).
    Paper- Molecular Breeding. 34: 1765-1776
    2014
    Competitive amplification of differentially melting amplicons facilitates efficient genotyping of photoperiod- and temperature- sensitive genic male sterility in rice, Zhang H-L, Huang J-Z*, Chen X-Y, Tan Y-Y, Shu Q-Y*
    Cuba
    Cultivos Tropicales, 2016, vol. 37, no. 1 (enero-marzo)
    2016
    Selección de genotipos de arroz de buen comportamiento agronómico en condiciones de bajo suministro de agua .María C. González Cepero y Anirebis Martínez Romero .
    Pakistan
    Paper presented in the International Conference on Stress Biology and Biotechnology: Challenges & Management. Institute of Agricultural Sciences, University of the Punjab, Quaid-e-Azam Campus, Lahore, Pakistan. pp15.
    2014
    Screening for heat tolerance in rice (Oryza sativa L.) through morpho-physiological profiling, Zafar, S. A., Hameed, A., Ashraf, M. and Khan, A. S. 2014.
    Cuba
    Cultivos Tropicales, 2016, vol. 37, no. 1 (enero-marzo)
    2016
    Evaluación de cultivares de arroz en diferentes zonas de producción arrocera de “Los Palacios”, Pinar del Río, para su utilización en programas de mejoramiento .Noraida de J. Pérez León, María C. González Cepero, Rodolfo I. Castro Mendui?a y Manuel Aguilar.
    Centro Internacional de Agricultura Tropical (CIAT)- COLOMBIA
    Handbook of Plant and Crop Physiology. pp. 847-889. Pessarakli M., Eds. CRC Press, Taylor and Francis Group, USA.
    2014
    Rao, I. M. Advances in improving adaptation of common bean and Brachiaria forage grasses to abiotic stress in the tropics.
    Centro Internacional de Agricultura Tropical (CIAT)-COLOMBIA
    Turkish Journal of Field Crops 18: 73-77.
    2013
    Ghanbari, A. A., S. H. Mousavi, A. M. Gorji and I. Rao. 2013. Effects of water stress on leaves and seeds of bean (Phaseolus vulgaris L.).
    China
    Paper- -Southwest China Journal of Agricultural Sciences- 26:1387-1391
    2013
    Influences of Natural High-temperature Stress on Heat Resistance of Rice- Su P, Feng H, Chen H, Yang CM, Wu XB, Huang Q
    Austria, Vienna
    Poster presentation Plant Abiotic Stress III. Congress 29 June- 1 July 2015, Vienna, Austria. Book of Abstract page 48.
    2015
    Development of Heat Tolerance Screening Techniques of Common and Tepary Beans Mutants for Adaptation to High Temperature in Drought Prone Areas-Sarsu, F., Caridad M., and Mu?oz C.
    China
    Paper, Scientia Agricultura Sinica. 48(1): 1-9 (doi: 10.3864/j.issn.0578-1752.2015.01.001)
    2015
    Identification and transition analysis of photo- /thermo-sensitive genic male sterile genes in two-line hybrid rice in China, Zhang H-L, Chen X-Y, Huang J-Z, E Z-G, Gong J-Y, Shu Q-Y
    Centro Internacional de Agricultura Tropical (CIAT)-COLOMBIA
    Field Crops Research 148: 24-33.
    2013
    Assefa, T., S. E. Beebe, I. M. Rao, J. B. Cuasquer, M. C. Duque, M. Rivera, A. Battisti, M. Lucchin. 2013. Pod harvest index as a selection criterion to improve drought resistance in white pea bean.
    Centro Internacional de Agricultura Tropical (CIAT)- COLOMBIA
    Plant Soil 364: 29-37.
    2013
    Devi, J. M., T. R. Sinclair, S. E. Beebe and I. M. Rao. 2013. Comparison of common bean (Phaseolus vulgaris L.) genotypes for nitrogen fixation tolerance to soil drying.
    Centro Internacional de Agricultura Tropical (CIAT)-COLOMBIA
    Plant Soil 364: 29-37./Journal
    2013
    Devi, J. M., T. R. Sinclair, S. E. Beebe and I. M. Rao. 2013. Comparison of common bean (Phaseolus vulgaris L.) genotypes for nitrogen fixation tolerance to soil drying.
    China
    Paper-Molecular Breeding. 34: 481-489
    2014
    Characterization of an RNase Z nonsense mutation identified exclusively in environment-conditioned genic male sterile rice. Zhang H-L, Huang J-Z, Liu Q-L, Nawaz Z, Lu H-P, Gong J-Y, Zhu Y-J, Yan W, Shu Q-Y*
    Jawaharlal Nehru University (JNU)-INDIA
    Plant Signal Behav. 2012 Nov 3;8(1). pii: e22734.
    2012
    Kumari S, Roy S, Singh P, Singla-Pareek SL, Pareek A.; Cyclophilins: Proteins in search of function.
    Department of Biology/UK
    Plant biotechnology and agriculture
    2012
    Heslop-Harrison JS, Schwarzacher T. Genetics and genomics of crop domestication :Prospects for the 21st century.
    Centro Internacional de Agricultura Tropical (CIAT)-COLOMBIA
    Frontiers in Plant Physiology 4, 35 (1-20).
    2013
    Beebe, S., I. Rao, M. Blair and J. Acosta. 2013. Phenotyping common beans for adaptation to drought.
    Beijing, China
    The 7th International Crop Science Congress, August 14-19, 2016,
    2016
    Huang J-Z. Frequency and type of inheritable mutations induced by gamma rays in rice as revealed by whole genome sequencing.
    Centro Internacional de Agricultura Tropical (CIAT)-COLOMBIA
    Plant Soil 372: 3-25/Journal
    2013
    Yang, Z., I. M. Rao and W. J. Horst. 2013. Interaction of aluminium and drought stress on root growth and crop yield on acid soils.
    Bangkok, Thailand
    Poster presentation- 4th International Rice Congress, 27 October- 01 November 2014, Bangkok, Thailand. Book of Abstract, p 85
    2014
    Climate proofing of food crops: Genetic improvement for adaptation to high temperatures in drought prone areas and beyond. 4th International Rice Congress-SARSU, F., M., M., SPENCER, C. HAO, A. PAREEK, P., DAS and T., PADOLINA
    Universidad Nacional Autónoma de México
    Oral Presentation, National Congress, XV Congress of Plant Biochemistry and Molecular Biology.
    2012
    Peláez et al. 2012 ; A conserved bZIP mRNA involved in the Unfolded Protein Response (UPR) is processed during common vean root nodule ontogeny
    Centro Internacional de Agricultura Tropical (CIAT)- COLOMBIA
    African Crop Science Journal 21: 265-281.
    2013
    Rao, I., S. Beebe, J. Polania, J. Ricaurte, C. Cajiao, R. García and M. Rivera; Can tepary bean be a model for improvement of drought resistance in common bean?
    Jawaharlal Nehru University (JNU)- INDIA
    Oral Presentation/International symposium on rice functional genomics. Page 66.
    2013
    Roy S, Kumari S, Singh P, Singla---Pareek SL, Pareek A (2013). A highly abundant, stress regulated rice cyclophilin (OsCyp2) confers multistress tolerance to evolutionary diverse organisms.
    Pakistan
    Pak. J. Botany. Pak. J. Bot., 49(2): 453-463, 2017
    2017
    Heat shock induced morpho- physiological response in indica rice (Oryza sativa L.) at early seedling stage, Zafar, S. A., Hameed, A., Khan, A. S. and Ashraf, M. 2017.
    Jawaharlal Nehru University (JNU)- INDIA
    Wageningen academic publisher. The Netherlands. ISBN: 978-90-8686-234-4. (in press).
    2013
    Eds: Nasya Tomlekova, Imran Kozgar and Rafiq Wani; A Powerful Approach for Obtaining Abiotic Stress Tolerant Crops and Upgrading Food Security for Human Nutrition. In: Mutagenesis: exploring novel genes and pathways.
    Departamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, Mexico
    Oral Presentation/ National Congress, XV Congress of Plant Biochemistry and Molecular Biology
    2012
    Peláez et al. 2012 . A conserved bZIP mRNA involved in the Unfolded Protein Response (UPR) is processed during common vean root nodule ontogeny”
    Austria, Vienna
    Poster presentation Plant Abiotic Stress III. Congress 29 June- 1 July 2015, Vienna, Austria. Book of Abstract page 48.
    2015
    Sarsu, F., Ashraf M., Caridad M., Kusolwa, P., Kihupi L., Rajab M., and N. Yona (2015) Rapid Screening Methods for Heat Stress Tolerance of Mutant Rice in the face of Climate Change.
    Jawaharlal Nehru University (JNU)- INDIA
    Plant Signaling/Journal
    2013
    Sumita Kumari, Suchismita Roy, Prabhjeet Singh, Sneh L. Singla-Pareek and Ashwani Pareek (2013). Cyclophilins: Proteins in search of function.
    Jawaharlal Nehru University (JNU)-INDIA
    Wageningen academic publisher. The Netherlands. ISBN: 978-90-8686-234-4. (in press)
    2013
    Priyanka Das, Manjari Mishra, Nita Lakra, Sneh L. Singla-Pareek (2013). Mutation Breeding: A Powerful Approach for Obtaining Abiotic Stress Tolerant Crops and Upgrading Food Security for Human Nutrition. In: Mutagenesis: exploring novel genes and pathways. Eds: Nasya Tomlekova, Imran Kozgar and Rafiq Wani.
    Zhejiang University- China
    Oral Presentation - International Conference on Genomics of Plant Genetic Resources:Chemically and Physically Induced Mutants:, 16-19 April 2013Jeju, Repulic of Korea
    2013
    Zhang H-L, Huang J-Z, Shu Q-Q, et al. An Overview of Molecular Nature and Prospect in Germplasm Innovation
    Centro Internacional de Agricultura Tropical (CIAT)- COLOMBIA
    Field Crops Research 148: 24-33.
    2013
    Assefa, T., S. E. Beebe, I. M. Rao, J. B. Cuasquer, M. C. Duque, M. Rivera, A. Battisti, M. Lucchin. 2013. Pod harvest index as a selection criterion to improve drought resistance in white pea bean.
    Zhejiang University
    Oral Presentation 16-19 April 2013, Jeju, Repulic of Korea 3rd International Conference on Genomics of Plant Genetic Resources Chemically and Physically Induced Mutants:
    2013
    Zhang H-L, Huang J-Z, Shu Q-Q, et al. An Overview of Molecular Nature and Prospect in Germplasm Innovation,
    China
    Hubei Agricultural Sciences, 2016, Vol. 55(23):6061-6066
    2016
    Identification of Heat Resistance in Radiation Breed Hybrid Rice ? YOU 838, Wang Y, Gao P, Fu Y, He J, Sun Q, Huang M
    China
    Plant Science Journal,2015,33(3):213-219
    2015
    Effects of High Temperature on the Activity and Expression of Antioxidative Enzymes in Rice Flag Leaves during Flowering Stage, Wang Y, Gao P, Huang M, Chen H, Yang ZR, Sun Qun. .
    China
    Paper, Rice. 7: 13
    2014
    Workable male sterility systems for hybrid rice: Genetics, biochemistry, molecular biology, and utilization. Huang J-Z, E Z-G, Zhang H-L, Shu Q-Y
    Netharland
    Book chapter -Academic Publishers, Pp 15-37.Editors: NasyaTomlekova, Imran Kozgar and Rafiq Wani. Publisher: Wageningen
    2013
    Mutation Breeding: A Powerful Approach for Obtaining Abiotic Stress Tolerant Crops and Upgrading Food Security for Human Nutrition, Priyanka Das, Manjari Mishra, Nita Lakra, Sneh Lata Singla-Pareek, Ashwani Pareek (2013).
    Shanghai, China
    The development of International isotopes and Radiation processing Seminar
    2011
    Detection of the antioxidase genes Expressionin in Radiation Breeding rice? YOU 838 after Heat Treatment. Wang Y, Gao P, Huang M, Wu L, Du XY, Lei
    Departamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, Mexico
    BMC Genomics,Journal
    2012
    Pablo Peláez, Minerva S Trejo, Luis P I?iguez, Georgina Estrada-Navarrete, Alejandra A Covarrubias, José L Reyes and Federico Sanchez; Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing
    Centro Internacional de Agricultura Tropical (CIAT)-COLOMBIA
    In: Handbook of Plant and Crop Physiology. pp. 847-889. Pessarakli M., Eds. CRC Press, Taylor and Francis Group, USA.
    2014
    Rao, I. M. 2014. Advances in improving adaptation of common bean and Brachiaria forage grasses to abiotic stress in the tropics.
    Centro Internacional de Agricultura Tropical (CIAT)- COLOMBIA
    Plant Soil 372: 3-25.
    2013
    Yang, Z., I. M. Rao and W. J. Horst. 2013. Interaction of aluminium and drought stress on root growth and crop yield on acid soils.
    Centro Internacional de Agricultura Tropical (CIAT)- COLOMBIA
    Frontiers in Plant Physiology 4, 35 (1-20).
    2013
    Beebe, S., I. Rao, M. Blair and J. Acosta. 2013. Phenotyping common beans for adaptation to drought.
    Centro Internacional de Agricultura Tropical (CIAT)-COLOMBIA
    African Crop Science Journal 21: 265-281
    2013
    Rao, I., S. Beebe, J. Polania, J. Ricaurte, C. Cajiao, R. García and M. Rivera. 2013. Can tepary bean be a model for improvement of drought resistance in common bean? .
    Repulic of Korea
    Third International Conference on Genomics of Plant Genetic Resources, April 16-19, 2013, Jeju,
    Chemically and physically induced mutants: An overview of molecular nature and prospect in germplasm innovation. Shu Q-Y.
    Jawaharlal Nehru University (JNU)- INDIA
    Oral Presentation - International symposium on rice functional genomics
    2013
    Das P, Singla---Pareek SL and Pareek A; Characterization of gamma-ray induced rice mutant reveals the alteration in plant morphology, chloroplast structure, thylakoid organization and expression of transcripts involved in chlorophyll biosynthesis. International symposium on rice functional genomics. Page 101
    Jawaharlal Nehru University (JNU)-INDIA
    Oral Presentation-International symposium on rice functional genomics. Page 66.
    2013
    Roy S, Kumari S, Singh P, Singla---Pareek SL, Pareek A (2013). A highly abundant, stress regulated rice cyclophilin (OsCyp2) confers multistress tolerance to evolutionary diverse organisms.

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